secretome protein sequences  (InterPro Inc)

Journal:

Article Title: The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

doi: 10.1101/gr.983703

Figure Lengend Snippet: Origin of Proteins Within the Mouse Secretome

Article Snippet: Secretome protein sequences without an InterPro or SCOP hit , 392.

Techniques: Derivative Assay

Journal:

Article Title: The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

doi: 10.1101/gr.983703

Figure Lengend Snippet: Size distribution of the proteins predicted to contain endoplasmic reticulum signal peptides within the PROCREST predicted ORFs of the RIKEN 60,770 FANTOM2 cDNA clone set and the mouse secretome. The total numbers of proteins within 50 amino acid blocks are plotted.

Article Snippet: Secretome protein sequences without an InterPro or SCOP hit , 392.

Techniques:

Journal:

Article Title: The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

doi: 10.1101/gr.983703

Figure Lengend Snippet: Origin of RPS Proteins Less Than 100 Amino Acids Within the Mouse Secretome

Article Snippet: Secretome protein sequences without an InterPro or SCOP hit , 392.

Techniques:

Journal:

Article Title: The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

doi: 10.1101/gr.983703

Figure Lengend Snippet: Distribution of InterPro domains and SCOP superfamilies associated with the mouse secretome. The proportion of individual InterPro domains (A) or SCOP superfamilies (B) within the mouse secretome relative to the total number of predicted domains within the RPS is plotted as a percentage ratio (Secretome/RPS). One hundred percent represents a domain that is only contained in proteins within the mouse secretome. All RPS protein sequences that could not be classified by the membrane organization methods were excluded (Kanapin et al. 2003).

Article Snippet: Secretome protein sequences without an InterPro or SCOP hit , 392.

Techniques: Membrane

Journal:

Article Title: The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

doi: 10.1101/gr.983703

Figure Lengend Snippet: Gene Ontology classification of the proteins within the mouse secretome.

Article Snippet: Secretome protein sequences without an InterPro or SCOP hit , 392.

Techniques:

Journal:

Article Title: The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

doi: 10.1101/gr.983703

Figure Lengend Snippet: Hierarchical clustering of gene expression data for 970 FANTOM2 cDNAs encoding secretome proteins across 22 mouse tissues. Results are presented in a dendrogram displaying related groups of genes (on the Y-axis) and tissues (on the X-axis). The relative expression of each cDNA is represented as a log2 ratio of hybridization signals between each tissue and a common reference mRNA sample (total 17.5 dpc mouse embryo). Blocks of red signal indicate high levels of expression in the tissue relative to the reference RNA. Blocks of green signify low levels of expression relative to the reference RNA. Grey blocks indicate data points that are missing. Along the right-hand side of the dendrogram are several yellow boxes labeled A to D, which define the location of four tissue-restricted clusters. (A) Neural restricted cluster. (B) Placenta cluster. (C) Digestive tract cluster. (D) Testis cluster.

Article Snippet: Secretome protein sequences without an InterPro or SCOP hit , 392.

Techniques: Gene Expression, Expressing, Hybridization, Labeling

Journal:

Article Title: The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

doi: 10.1101/gr.983703

Figure Lengend Snippet: Properties of the 2033 Mouse Secretome Proteins

Article Snippet: Secretome protein sequences without an InterPro or SCOP hit , 392.

Techniques: Derivative Assay